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Bio::DB::SQL::DBAdapter
Object representing an instance of a bioperl database

Bio::DB::SQL::DBAdapter - Object representing an instance of a bioperl database


NAME

Bio::DB::SQL::DBAdapter - Object representing an instance of a bioperl database


SYNOPSIS


    $db = Bio::DB::SQL::DBAdaptor->new(

        -user   => 'root',

        -dbname => 'pog',

        -host   => 'caldy',

        -driver => 'mysql',

        );


DESCRIPTION

This object represents a database that is implemented somehow (you shouldn\'t care much as long as you can get the object). From the object you can pull out other adapters, such as the BioSeqAdapter,


CONTACT

Describe contact details here


APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

prepare


 Title   : prepare

 Usage   : $sth = $dbobj->prepare("select seq_start,seq_end from feature where analysis = \" \" ");

 Function: prepares a SQL statement on the DBI handle

 Example :

 Returns : A DBI statement handle object

 Args    : a SQL string

get_PrimarySeqAdaptor


 Title   : get_PrimarySeqAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

get_SeqAdaptor


 Title   : get_SeqAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

get_BioDatabaseAdaptor


 Title   : get_BioDatabaseAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

get_SeqFeatureKeyAdaptor


 Title   : get_SeqFeatureKeyAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

get_SeqFeatureKeyAdaptor


 Title   : get_SeqFeatureKeyAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

get_SeqFeatureSourceAdaptor


 Title   : get_SeqFeatureSourceAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

get_SeqLocationAdaptor


 Title   : get_SeqLocationAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

get_SeqLocationAdaptor


 Title   : get_SeqLocationAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

get_CommentAdaptor


 Title   : get_CommentAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

get_ReferenceAdaptor


 Title   : get_ReferenceAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

get_DBLinkAdaptor


 Title   : get_DBLinkAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

get_SpeciesAdaptor


 Title   : get_SpeciesAdaptor

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :

_db_handle


 Title   : _db_handle

 Usage   : $obj->_db_handle($newval)

 Function: 

 Example : 

 Returns : value of _db_handle

 Args    : newvalue (optional)

DESTROY


 Title   : DESTROY

 Usage   :

 Function:

 Example :

 Returns : 

 Args    :
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